2018-10-04 10:01:582025-05-24 12:24:06
title
ylxY
swsB
description
similar to deacetylase
similar to deacetylase, required for efficient degradation of the spore cortex by [[protein|CwlJ]] during [SW|germination]
locus
BSU16700
BSU_16700
geneLength
957
960
function
unknown
required for spore cortex degradation during [SW|germination]
ec
names
ylxY
ymxI
swsB
ylxY
ymxI
outlinks
bsu
BSU16700
BSU_16700
Gene
Coordinates
1,741,618 → 1,742,577
1,741,618 1,742,577
The protein
Protein family
polysaccharide deacetylase family (according to Swiss-Prot)
[SW|polysaccharide deacetylase family] (according to UniProt)
Biological materials
Mutant
BKE16700 (Δ[[gene|swsB]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE16700 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTCTGTCCCCCCCTCA, downstream forward: _UP4_TAACAGATGAAGGCAGCTTG
BKK16700 (Δ[[gene|swsB]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK16700 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTCTGTCCCCCCCTCA, downstream forward: _UP4_TAACAGATGAAGGCAGCTTG
BKE16700 ([[gene|swsB]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE16700 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTCTGTCCCCCCCTCA, downstream forward: _UP4_TAACAGATGAAGGCAGCTTG
BKK16700 ([[gene|swsB]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK16700 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTCTGTCCCCCCCTCA, downstream forward: _UP4_TAACAGATGAAGGCAGCTTG
References
The protein
Paralogous protein(s)
[[this]]
The protein
[SW|Domains]
[SW|NodB homology domain] (aa 130-306) (according to UniProt)
The protein
Structure
[PDB|1W17] ([[protein|PdaA]], corresponds to aa 120 ... 317, 31% identity) [pubmed|15251431]